Publications

Publications

Ayariga, J. A., Dean, M., Nyairo, E., Thomas, V., & Dean, D. (2021). PLA/HA Multiscale nano-/micro-hybrid 3d scaffolds provide inductive cues to stems cells to differentiate into an osteogenic lineage. Additive Manufacturing for Medical Applications, 73(12), 3787–3797. https://doi.org/10.1007/S11837-021-04912-7

Ayariga, J. A., Dean, M., Nyairo, E., Thomas, V., & Dean, D. (2021). PLA/HA Multiscale nano-/micro-hybrid 3d scaffolds provide inductive cues to stem cells to differentiate into an osteogenic lineage. Additive Manufacturing for Medical Applications, 73(12), 3787–3797. https://doi.org/10.1007/S11837-021-04912-7

Borodinov, N., Bilkey, N., Foston, M., Ievlev, A. V., Belianinov, A., Jesse, S., Vasudevan, R. K., Kalinin, S. V., & Ovchinnikova, O. S. (2019). Application of pan-sharpening algorithm for correlative multimodal imaging using AFM-IR. Npj Computational Materials, 5(1), 1–9. https://doi.org/10.1038/s41524-019-0186-z

Borodinov, N., Bilkey, N., Foston, M., Ievlev, A. V., Belianinov, A., Jesse, S., Vasudevan, R. K., Kalinin, S. V., & Ovchinnikova, O. S. (2019). Application of pan-sharpening algorithm for correlative multimodal imaging using AFM-IR. Npj Computational Materials, 5(1), 1–9. https://doi.org/10.1038/s41524-019-0186-z

Borodinov, N., Bilkey, N., Foston, M., Ievlev, A. V., Belianinov, A., Jesse, S., Vasudevan, R. K., Kalinin, S. V., & Ovchinnikova, O. S. (2019). Spectral map reconstruction using pan-sharpening algorithm: enhancing chemical imaging with AFM-IR. Microscopy and Microanalysis, 25(S2), 1024–1025. https://doi.org/10.1017/s1431927619005853

Borodinov, N., Bilkey, N., Foston, M., Ievlev, A. V., Belianinov, A., Jesse, S., Vasudevan, R. K., Kalinin, S. V., & Ovchinnikova, O. S. (2019). Spectral map reconstruction using pan-sharpening algorithm: enhancing chemical imaging with AFM-IR. Microscopy and Microanalysis, 25(S2), 1024–1025. https://doi.org/10.1017/s1431927619005853

Cashin, J. L., Wirtz, A. J., Genin, G. M., & Zayed, M. (2022). A Fenestrated Balloon Expandable Stent System for the Treatment of Aortoiliac Occlusive Disease. Journal of Engineering and Science in Medical Diagnostics and Therapy, 6(1). https://doi.org/10.1115/1.4055877 

Cashin, J. L., Wirtz, A. J., Genin, G. M., & Zayed, M. (2022). A Fenestrated Balloon Expandable Stent System for the Treatment of Aortoiliac Occlusive Disease. Journal of Engineering and Science in Medical Diagnostics and Therapy, 6(1). https://doi.org/10.1115/1.4055877 

Charrier, E. E., Pogoda, K., Li, R., Park, C. Y., Fredberg, J. J., & Janmey, P. A. (2020). A novel method to make viscoelastic polyacrylamide gels for cell culture and traction force microscopy. APL Bioengineering, 4(3), 36104. https://doi.org/10.1063/5.0002750

Charrier, E. E., Pogoda, K., Li, R., Park, C. Y., Fredberg, J. J., & Janmey, P. A. (2020). A novel method to make viscoelastic polyacrylamide gels for cell culture and traction force microscopy. APL Bioengineering, 4(3), 36104. https://doi.org/10.1063/5.0002750

Chen, B., He, B., Tucker, A. M., Biluck, I., Leung, T. H., Schaer, T. P., & Yang, S. (2024). An Environmentally Stable, Biocompatible, and Multilayered Wound Dressing Film with Reversible and Strong Adhesion. Advanced Healthcare Materials, n/a(n/a), 2400827. https://doi.org/https://doi.org/10.1002/adhm.202400827

Chen, B., He, B., Tucker, A. M., Biluck, I., Leung, T. H., Schaer, T. P., & Yang, S. (2024). An Environmentally Stable, Biocompatible, and Multilayered Wound Dressing Film with Reversible and Strong Adhesion. Advanced Healthcare Materials, n/a(n/a), 2400827. https://doi.org/10.1002/adhm.202400827

Clark, A. T., Bennett, A., Kraus, E., Pogoda, K., Cebers, A., Janmey, P. A., Turner, K. T., Corbin, E. A., & Cheng, X. (2021). Magnetic field tuning of mechanical properties of ultrasoft PDMS-based magnetorheological elastomers for biological applications. Multifunctional Materials. https://doi.org/10.1088/2399-7532/AC1B7E

Clark, A. T., Bennett, A., Kraus, E., Pogoda, K., Cebers, A., Janmey, P. A., Turner, K. T., Corbin, E. A., & Cheng, X. (2021). Magnetic field tuning of mechanical properties of ultrasoft PDMS-based magnetorheological elastomers for biological applications. Multifunctional Materials. https://doi.org/10.1088/2399-7532/AC1B7E

Cottone, A. M., Jeong, A., Nguyen, Y., McGonigle, J., Rosario, M., & Wells, R. (2024). Examining design features of a Research Experience for Teachers in mechanobiology towards promoting K-12 STEM integration. Proceedings of the 18th International Conference of the Learning Sciences. , 1670-1673.

Cottone, A. M., Jeong, A., Nguyen, Y., McGonigle, J., Rosario, M., & Wells, R. (2024). Examining design features of a Research Experience for Teachers in mechanobiology towards promoting K-12 STEM integration. Proceedings of the 18th International Conference of the Learning Sciences. , 1670-1673. https://repository.isls.org/bitstream/1/10780/1/ICLS2024_1670-1673.pdf

Cruz-Acuña, R., Kariuki, S. W., Sugiura, K., Karaiskos, S., Plaster, E. M., Loebel, C., Efe, G., Karakasheva, T. A., Gabre, J. T., Hu, J., Burdick, J. A., & Rustgi, A. K. (2023). Engineered hydrogel reveals contribution of matrix mechanics to esophageal adenocarcinoma and identifies matrix-activated therapeutic targets. The Journal of Clinical Investigation. https://doi.org/10.1172/JCI168146

Cruz-Acuña, R., Kariuki, S. W., Sugiura, K., Karaiskos, S., Plaster, E. M., Loebel, C., Efe, G., Karakasheva, T. A., Gabre, J. T., Hu, J., Burdick, J. A., & Rustgi, A. K. (2023). Engineered hydrogel reveals contribution of matrix mechanics to esophageal adenocarcinoma and identifies matrix-activated therapeutic targets. The Journal of Clinical Investigation. https://doi.org/10.1172/JCI168146

Daly, A. C., Davidson, M. D., & Burdick, J. A. (2021). 3D bioprinting of high cell-density heterogeneous tissue models through spheroid fusion within self-healing hydrogels. Nature Communications, 12(1), 1–13. https://doi.org/10.1038/s41467-021-21029-2

Daly, A. C., Davidson, M. D., & Burdick, J. A. (2021). 3D bioprinting of high cell-density heterogeneous tissue models through spheroid fusion within self-healing hydrogels. Nature Communications, 12(1), 1–13. https://doi.org/10.1038/s41467-021-21029-2

Davidson, M. D., Ban, E., Schoonen, A. C. M., Lee, M., D’Este, M., Shenoy, V. B., & Burdick, J. A. (2020). Mechanochemical adhesion and plasticity in multifiber hydrogel networks. Advanced Materials, 32(8), 1905719. https://doi.org/10.1002/adma.201905719

Davidson, M. D., Ban, E., Schoonen, A. C. M., Lee, M., D’Este, M., Shenoy, V. B., & Burdick, J. A. (2020). Mechanochemical adhesion and plasticity in multifiber hydrogel networks. Advanced Materials, 32(8), 1905719. https://doi.org/10.1002/adma.201905719

Dhand, A. P., Galarraga, J. H., & Burdick, J. A. (2020). Enhancing biopolymer hydrogel functionality through Interpenetrating networks. In Trends in Biotechnology (Vol. 39, Issue 5, pp. 519–538). Elsevier Ltd. https://doi.org/10.1016/j.tibtech.2020.08.007

Dhand, A. P., Galarraga, J. H., & Burdick, J. A. (2020). Enhancing biopolymer hydrogel functionality through interpenetrating networks. In Trends in Biotechnology (Vol. 39, Issue 5, pp. 519–538). Elsevier Ltd. https://doi.org/10.1016/j.tibtech.2020.08.007

Du, Y., de Jong, I. E., Gupta, K., Waisbourd-Zinman, O., Har-Zahav, A., Soroka, C. J., Boyer, J. L., Llewellyn, J., Liu, C., Naji, A., Polacheck, W. J., & Wells, R. G. (2023). Human vascularized bile duct-on-a chip: a multi-cellular micro-physiological system for studying cholestatic liver disease. Biofabrication. https://doi.org/10.1088/1758-5090/ad0261

Du, Y., de Jong, I. E., Gupta, K., Waisbourd-Zinman, O., Har-Zahav, A., Soroka, C. J., Boyer, J. L., Llewellyn, J., Liu, C., Naji, A., Polacheck, W. J., & Wells, R. G. (2023). Human vascularized bile duct-on-a chip: a multi-cellular micro-physiological system for studying cholestatic liver disease. Biofabrication. https://doi.org/10.1088/1758-5090/ad0261

Ewoldt, J. K., Wang, M.C., McLellan, M.A., Cloonan, P.E., Chopra, A., Gorham, J., Li, L., DeLaughter, D.M., Gao, X., Lee, J.H., Willcox J.A.L., Layton, O., Luu, R.J., Toepfer, C.N., Eyckmans, J., Seidman, C.E., Seidman, J.G., & Chen, C.S. (2024). Hypertrophic cardiomyopathy-associated mutations drive stromal activation via EGFR-mediated paracrine signaling. Science Advances, 10(42). https://doi.org/10.1126/sciadv.adi6927

Ewoldt, J. K., Wang, M.C., McLellan, M.A., Cloonan, P.E., Chopra, A., Gorham, J., Li, L., DeLaughter, D.M., Gao, X., Lee, J.H., Willcox J.A.L., Layton, O., Luu, R.J., Toepfer, C.N., Eyckmans, J., Seidman, C.E., Seidman, J.G., & Chen, C.S. (2024). Hypertrophic cardiomyopathy-associated mutations drive stromal activation via EGFR-mediated paracrine signaling. Science Advances, 10(42). https://doi.org/10.1126/sciadv.adi6927

Fang, F., Linstadt, R. T. H., Genin, G. M., Ahn, K., & Thomopoulos, S. (2022). Mechanically Competent Chitosan-Based Bioadhesive for Tendon-to-Bone Repair [https://doi.org/10.1002/adhm.202102344]. Advanced Healthcare Materials, 11(10), 2102344. https://doi.org/https://doi.org/10.1002/adhm.202102344 

Fang, F., Linstadt, R. T. H., Genin, G. M., Ahn, K., & Thomopoulos, S. (2022). Mechanically Competent Chitosan-Based Bioadhesive for Tendon-to-Bone Repair [https://doi.org/10.1002/adhm.202102344]. Advanced Healthcare Materials, 11(10), 2102344. https://doi.org/https://doi.org/10.1002/adhm.202102344 

Gagnon, K. A., Huang, J., Hix, O. T., Hui, V. W., Hinds, A., Bullitt, E., Eyckmans, J., Kotton, D. N., & Chen, C. S. (2024). Multicompartment duct platform to study epithelial–endothelial crosstalk associated with lung adenocarcinoma. APL Bioengineering, 8(2), 026126. https://doi.org/10.1063/5.0207228

Gagnon, K. A., Huang, J., Hix, O. T., Hui, V. W., Hinds, A., Bullitt, E., Eyckmans, J., Kotton, D. N., & Chen, C. S. (2024). Multicompartment duct platform to study epithelial–endothelial crosstalk associated with lung adenocarcinoma. APL Bioengineering, 8(2), 026126. https://doi.org/10.1063/5.0207228

Galarraga, J. H., Dhand, A. P., Bruce P.  Enzmann, I., & Burdick, J. A. (2022). Synthesis, Characterization, and Digital Light Processing of a Hydrolytically Degradable Hyaluronic Acid Hydrogel. Biomacromolecules. https://doi.org/10.1021/ACS.BIOMAC.2C01218

Galarraga, J. H., Dhand, A. P., Bruce P.  Enzmann, I., & Burdick, J. A. (2022). Synthesis, Characterization, and Digital Light Processing of a Hydrolytically Degradable Hyaluronic Acid Hydrogel. Biomacromolecules. https://doi.org/10.1021/ACS.BIOMAC.2C01218

Galie, P. A., Pogoda, K., Tran, K. A., Cēbers, A., & Janmey, P. A. (2024). Magnetoelastic Elastomers and Hydrogels for Studies of Mechanobiology. In B. Doudin, M. Coey, & A. Cēbers (Eds.), Magnetic Microhydrodynamics: An Emerging Research Field (pp. 143-156). Springer International Publishing. https://doi.org/10.1007/978-3-031-58376-6_11

Galie, P. A., Pogoda, K., Tran, K. A., Cēbers, A., & Janmey, P. A. (2024). Magnetoelastic Elastomers and Hydrogels for Studies of Mechanobiology. In B. Doudin, M. Coey, & A. Cēbers (Eds.), Magnetic Microhydrodynamics: An Emerging Research Field (pp. 143-156). Springer International Publishing. https://doi.org/10.1007/978-3-031-58376-6_11

Gardini, L., Woody, M. S., Kashchuk, A. v., Goldman, Y. E., Ostap, E. M., & Capitanio, M. (2022). High-Speed Optical Traps Address Dynamics of Processive and Non-Processive Molecular Motors. Methods in Molecular Biology (Clifton, N.J.), 2478, 513–557. https://doi.org/10.1007/978-1-0716-2229-2_19

Gardini, L., Woody, M. S., Kashchuk, A. v., Goldman, Y. E., Ostap, E. M., & Capitanio, M. (2022). High-Speed Optical Traps Address Dynamics of Processive and Non-Processive Molecular Motors. Methods in Molecular Biology (Clifton, N.J.), 2478, 513–557. https://doi.org/10.1007/978-1-0716-2229-2_19

Gupta, R., Gupta, P., Wang, S., Melnykov, A., Jiang, Q., Seth, A., Wang, Z., Morrissey, J. J., George, I., Gandra, S., Sinha, P., Storch, G. A., Parikh, B. A., Genin, G. M., & Singamaneni, S. (2023). Ultrasensitive lateral-flow assays via plasmonically active antibody-conjugated fluorescent nanoparticles. Nature Biomedical Engineering 2023, 1–15. https://doi.org/10.1038/s41551-022-01001-1

Gupta, R., Gupta, P., Wang, S., Melnykov, A., Jiang, Q., Seth, A., Wang, Z., Morrissey, J. J., George, I., Gandra, S., Sinha, P., Storch, G. A., Parikh, B. A., Genin, G. M., & Singamaneni, S. (2023). Ultrasensitive lateral-flow assays via plasmonically active antibody-conjugated fluorescent nanoparticles. Nature Biomedical Engineering 2023, 1–15. https://doi.org/10.1038/s41551-022-01001-1

Huang, H., Ayariga, J., Ning, H., Nyairo, E., & Dean, D. (2021). Freeze-printing of pectin/alginate scaffolds with high resolution, overhang structures and interconnected porous network. Additive Manufacturing, 46, 102120. https://doi.org/10.1016/J.ADDMA.2021.102120

Huang, H., Ayariga, J., Ning, H., Nyairo, E., & Dean, D. (2021). Freeze-printing of pectin/alginate scaffolds with high resolution, overhang structures and interconnected porous network. Additive Manufacturing, 46, 102120. https://doi.org/10.1016/J.ADDMA.2021.102120

Jamiolkowski, R. M., Chen, K. Y., Fiorenza, S. A., Tate, A. M., Pfeil, S. H., & Goldman, Y. E. (2019). Nanoaperture fabrication via colloidal lithography for single molecule fluorescence analysis. PLOS ONE, 14(10), e0222964. https://doi.org/10.1371/journal.pone.0222964

Jamiolkowski, R. M., Chen, K. Y., Fiorenza, S. A., Tate, A. M., Pfeil, S. H., & Goldman, Y. E. (2019). Nanoaperture fabrication via colloidal lithography for single molecule fluorescence analysis. PLOS ONE, 14(10), e0222964. https://doi.org/10.1371/journal.pone.0222964

Jiang, S., Lyu, C., Zhao, P., Li, W., Kong, W., Huang, C., Genin, G. M., & Du, Y. (2019). Cryoprotectant enables structural control of porous scaffolds for exploration of cellular mechano-responsiveness in 3D. Nature Communications, 10(1), 1–14. https://doi.org/10.1038/s41467-019-11397-1

Jiang, S., Lyu, C., Zhao, P., Li, W., Kong, W., Huang, C., Genin, G. M., & Du, Y. (2019). Cryoprotectant enables structural control of porous scaffolds for exploration of cellular mechano-responsiveness in 3D. Nature Communications, 10(1), 1–14. https://doi.org/10.1038/s41467-019-11397-1

Khare, E., Peng, X., Martín-Moldes, Z., Genin, G. M., Kaplan, D. L., & Buehler, M. J. (2023). Application of the Interagency and Modeling Analysis Group Model Verification Approach for Scientific Reproducibility in a Study of Biomineralization. ACS Biomaterials Science & Engineering. https://doi.org/doi.org/10.1021/acsbiomaterials.3c00147

Khare, E., Peng, X., Martín-Moldes, Z., Genin, G. M., Kaplan, D. L., & Buehler, M. J. (2023). Application of the Interagency and Modeling Analysis Group Model Verification Approach for Scientific Reproducibility in a Study of Biomineralization. ACS Biomaterials Science & Engineering. https://doi.org/10.1021/acsbiomaterials.3c00147

Kurtaliaj, I., Hoppe, E. D., Huang, Y., Ju, D., Sandler, J. A., Yoon, D., Smith, L. J., Betancur, S. T., Effiong, L., Gardner, T., Tedesco, L., Desai, S., Birman, V., Levine, W. N., Genin, G. M., & Thomopoulos, S. Python tooth–inspired fixation device for enhanced rotator cuff repair. Science Advances, 10(26), eadl5270. https://doi.org/10.1126/sciadv.adl5270

Kurtaliaj, I., Hoppe, E. D., Huang, Y., Ju, D., Sandler, J. A., Yoon, D., Smith, L. J., Betancur, S. T., Effiong, L., Gardner, T., Tedesco, L., Desai, S., Birman, V., Levine, W. N., Genin, G. M., & Thomopoulos, S. Python tooth–inspired fixation device for enhanced rotator cuff repair. Science Advances, 10(26), eadl5270. https://doi.org/10.1126/sciadv.adl5270

Li, L., Griebel, M. E., Uroz, M., Bubli, S. Y., Gagnon, K. A., Trappmann, B., Baker, B. M., Eyckmans, J., & Chen, C. S. (2024). A Protein‐Adsorbent Hydrogel with Tunable Stiffness for Tissue Culture Demonstrates Matrix‐Dependent Stiffness Responses. Advanced Functional Materials, 2309567. https://doi.org/10.1002/adfm.202309567

Li, L., Griebel, M. E., Uroz, M., Bubli, S. Y., Gagnon, K. A., Trappmann, B., Baker, B. M., Eyckmans, J., & Chen, C. S. (2024). A Protein‐Adsorbent Hydrogel with Tunable Stiffness for Tissue Culture Demonstrates Matrix‐Dependent Stiffness Responses. Advanced Functional Materials, 2309567. https://doi.org/10.1002/adfm.202309567

Loebel, C., Kwon, M. Y., Wang, C., Han, L., Mauck, R. L., & Burdick, J. A. (2020). Metabolic labeling to probe the spatiotemporal accumulation of matrix at the chondrocyte-hydrogel interface. Advanced Functional Materials, 1909802. https://doi.org/10.1002/adfm.201909802

Loebel, C., Kwon, M. Y., Wang, C., Han, L., Mauck, R. L., & Burdick, J. A. (2020). Metabolic labeling to probe the spatiotemporal accumulation of matrix at the chondrocyte-hydrogel interface. Advanced Functional Materials, 1909802. https://doi.org/10.1002/adfm.201909802

Loebel, C., Weiner, A. I., Eiken, M. K., Katzen, J. B., Morley, M. P., Bala, V., Cardenas-Diaz, F. L., Davidson, M. D., Shiraishi, K., Basil, M. C., Ferguson, L. T., Spence, J. R., Ochs, M., Beers, M. F., Morrisey, E. E., Vaughan, A. E., & Burdick, J. A. (2022). Microstructured Hydrogels to Guide Self-Assembly and Function of Lung Alveolospheres. Advanced Materials, 34(28), 2202992-2202992. https://doi.org/10.1002/ADMA.202202992 

Loebel, C., Weiner, A. I., Eiken, M. K., Katzen, J. B., Morley, M. P., Bala, V., Cardenas-Diaz, F. L., Davidson, M. D., Shiraishi, K., Basil, M. C., Ferguson, L. T., Spence, J. R., Ochs, M., Beers, M. F., Morrisey, E. E., Vaughan, A. E., & Burdick, J. A. (2022). Microstructured Hydrogels to Guide Self-Assembly and Function of Lung Alveolospheres. Advanced Materials, 34(28), 2202992-2202992. https://doi.org/10.1002/ADMA.202202992 

Masucci, E. M., Relich, P. K., Ostap, E. M., Holzbaur, E. L. F., & Lakadamyali, M. (2020). Cega: A single particle segmentation algorithm to identify moving particles in a noisy system. In bioRxiv (p. 2020.12.24.424334). bioRxiv. https://doi.org/10.1101/2020.12.24.424334

Masucci, E. M., Relich, P. K., Ostap, E. M., Holzbaur, E. L. F., & Lakadamyali, M. (2020). Cega: A single particle segmentation algorithm to identify moving particles in a noisy system. Molecular Biology of the Cell, 32 (9). https://doi.org/10.1091/mbc.E20-11-0744

McDermott, A. M., Herberg, S., Mason, D. E., Collins, J. M., Pearson, H. B., Dawahare, J. H., Tang, R., Patwa, A. N., Grinstaff, M. W., Kelly, D. J., Alsberg, E., & Boerckel, J. D. (2019). Recapitulating bone development through engineered mesenchymal condensations and mechanical cues for tissue regeneration. Science Translational Medicine, 11(495). https://doi.org/10.1126/scitranslmed.aav7756

McDermott, A. M., Herberg, S., Mason, D. E., Collins, J. M., Pearson, H. B., Dawahare, J. H., Tang, R., Patwa, A. N., Grinstaff, M. W., Kelly, D. J., Alsberg, E., & Boerckel, J. D. (2019). Recapitulating bone development through engineered mesenchymal condensations and mechanical cues for tissue regeneration. Science Translational Medicine, 11(495). https://doi.org/10.1126/scitranslmed.aav7756

Michas, C., Karakan, M. Ç., Nautiyal, P., Seidman, J. G., Seidman, C. E., Agarwal, A., Ekinci, K., Eyckmans, J., White, A. E., & Chen, C. S. (2022). Engineering a living cardiac pump on a chip using high-precision fabrication. Science Advances, 8(16), 3791. https://doi.org/10.1126/SCIADV.ABM3791

Michas, C., Karakan, M. Ç., Nautiyal, P., Seidman, J. G., Seidman, C. E., Agarwal, A., Ekinci, K., Eyckmans, J., White, A. E., & Chen, C. S. (2022). Engineering a living cardiac pump on a chip using high-precision fabrication. Science Advances, 8(16), 3791. https://doi.org/10.1126/SCIADV.ABM3791

Moheimani, H., Stealey, S., Neal, S., Ferchichi, E., Zhang, J., Foston, M., Setton, L. A., Genin, G. M., Huebsch, N., & Zustiak, S. P. (2024). Tunable Viscoelasticity of Alginate Hydrogels via Serial Autoclaving. Advanced Healthcare Materials, 2401550. https://doi.org/https://doi.org/10.1002/adhm.202401550

Moheimani, H., Stealey, S., Neal, S., Ferchichi, E., Zhang, J., Foston, M., Setton, L. A., Genin, G. M., Huebsch, N., & Zustiak, S. P. (2024). Tunable Viscoelasticity of Alginate Hydrogels via Serial Autoclaving. Advanced Healthcare Materials, 2401550. https://doi.org/10.1002/adhm.202401550

Mora-Boza, A., Mulero-Russe, A., Di Caprio, N., Burdick, J. A., O’Neill, E., Singh, A., & García, A. J. (2024). Facile photopatterning of perfusable microchannels in hydrogels for microphysiological systems. Nature Protocols. https://doi.org/10.1038/s41596-024-01041-8

Mora-Boza, A., Mulero-Russe, A., Di Caprio, N., Burdick, J. A., O’Neill, E., Singh, A., & García, A. J. (2024). Facile photopatterning of perfusable microchannels in hydrogels for microphysiological systems. Nature Protocols. https://doi.org/10.1038/s41596-024-01041-8

Paek, J., Park, S. E., Lu, Q., Park, K. T., Cho, M., Oh, J. M., Kwon, K. W., Yi, Y. S., Song, J. W., Edelstein, H. I., Ishibashi, J., Yang, W., Myerson, J. W., Kiseleva, R. Y., Aprelev, P., Hood, E. D., Stambolian, D., Seale, P., Muzykantov, V. R., & Huh, D. (2019). Microphysiological engineering of self-assembled and perfusable microvascular beds for the production of vascularized three-dimensional human microtissues. ACS Nano, 13(7), 7627–7643. https://doi.org/10.1021/acsnano.9b00686

Paek, J., Park, S. E., Lu, Q., Park, K. T., Cho, M., Oh, J. M., Kwon, K. W., Yi, Y. S., Song, J. W., Edelstein, H. I., Ishibashi, J., Yang, W., Myerson, J. W., Kiseleva, R. Y., Aprelev, P., Hood, E. D., Stambolian, D., Seale, P., Muzykantov, V. R., & Huh, D. (2019). Microphysiological engineering of self-assembled and perfusable microvascular beds for the production of vascularized three-dimensional human microtissues. ACS Nano, 13(7), 7627–7643. https://doi.org/10.1021/acsnano.9b00686

Paek, J., Song, J. W., Ban, E., Morimitsu, Y., Osuji, C. O., Shenoy, V. B., & Huh, D. D. (2021). Soft robotic constrictor for in vitro modeling of dynamic tissue compression. Scientific Reports, 11:1, 11(1), 1–11. https://doi.org/10.1038/s41598-021-94769-2

Paek, J., Song, J. W., Ban, E., Morimitsu, Y., Osuji, C. O., Shenoy, V. B., & Huh, D. D. (2021). Soft robotic constrictor for in vitro modeling of dynamic tissue compression. Scientific Reports, 11:1, 11(1), 1–11. https://doi.org/10.1038/s41598-021-94769-2

Panebianco, C. J., Nijsure, M. P., Berlew, E. E., Jeong, A. L., & Boerckel, J. D. (2023). Adjusting to Your Surroundings: An Inquiry-Based Learning Module to Teach Principles of Mechanobiology for Regenerative Medicine. Biomedical Engineering Education. https://doi.org/10.1007/s43683-023-00130-6

Panebianco, C. J., Nijsure, M. P., Berlew, E. E., Jeong, A. L., & Boerckel, J. D. (2023). Adjusting to Your Surroundings: An Inquiry-Based Learning Module to Teach Principles of Mechanobiology for Regenerative Medicine. Biomedical Engineering Education. https://doi.org/10.1007/s43683-023-00130-6

Pardo, A., Gomez‐Florit, M., Davidson, M. D., Özgen Öztürk‐Öncel, M., Domingues, R. M., Burdick, J. A., & Gomes, M. E. (2024). Hierarchical Design of Tissue‐Mimetic Fibrillar Hydrogel Scaffolds. Advanced Healthcare Materials, 2303167. https://doi.org/10.1002/adhm.202303167

Pardo, A., Gomez‐Florit, M., Davidson, M. D., Özgen Öztürk‐Öncel, M., Domingues, R. M., Burdick, J. A., & Gomes, M. E.(2024). Hierarchical Design of Tissue‐Mimetic Fibrillar Hydrogel Scaffolds. Advanced Healthcare Materials, 2303167. https://doi.org/10.1002/adhm.202303167

Patel, J. M., Loebel, C., Saleh, K. S., Wise, B. C., Bonnevie, E. D., Miller, L. M., Carey, J. L., Burdick, J. A., & Mauck, R. L. (2021). Stabilization of damaged articular cartilage with hydrogel‐mediated reinforcement and sealing. Advanced Healthcare Materials, 2100315. https://doi.org/10.1002/adhm.202100315

Patel, J. M., Loebel, C., Saleh, K. S., Wise, B. C., Bonnevie, E. D., Miller, L. M., Carey, J. L., Burdick, J. A., & Mauck, R. L. (2021). Stabilization of damaged articular cartilage with hydrogel‐mediated reinforcement and sealing. Advanced Healthcare Materials, 2100315. https://doi.org/10.1002/adhm.202100315

Prendergast, M. E., Davidson, M., & Burdick, J. A. (2021). A biofabrication method to align cells within bioprinted photocrosslinkable and cell-degradable hydrogel constructs via embedded fibers. Biofabrication, 9. https://doi.org/10.1088/1758-5090/AC25CC

Prendergast, M. E., Davidson, M., & Burdick, J. A. (2021). A biofabrication method to align cells within bioprinted photocrosslinkable and cell-degradable hydrogel constructs via embedded fibers. Biofabrication, 9. https://doi.org/10.1088/1758-5090/AC25CC

Qazi, T. H., Muir, V. G., & Burdick, J. A. (2022). Methods to characterize granular hydrogel rheological properties, porosity, and cell invasion. ACS Biomaterials Science & Engineering, 8(4), 1427–1442. https://doi.org/10.1021/ACSBIOMATERIALS.1C01440

Qazi, T. H., Muir, V. G., & Burdick, J. A. (2022). Methods to characterize granular hydrogel rheological properties, porosity, and cell invasion. ACS Biomaterials Science & Engineering, 8(4), 1427–1442. https://doi.org/10.1021/ACSBIOMATERIALS.1C01440

Riffe, M. B., Davidson, M. D., Seymour, G., Dhand, A. P., Cooke, M. E., Zlotnick, H. M., McLeod, R. R., & Burdick, J. A. (2024). Multi‐Material Volumetric Additive Manufacturing of Hydrogels Using Gelatin as A Sacrificial Network And 3d Suspension Bath. Advanced Materials, 2309026. https://doi.org/10.1002/adma.202309026

Riffe, M. B., Davidson, M. D., Seymour, G., Dhand, A. P., Cooke, M. E., Zlotnick, H. M., McLeod, R. R., & Burdick, J. A. (2024). Multi‐Material Volumetric Additive Manufacturing of Hydrogels Using Gelatin as A Sacrificial Network And 3d Suspension Bath. Advanced Materials, 2309026. https://doi.org/10.1002/adma.202309026

Schindler, C., Singh, S., Catledge, S. A., Thomas, V., & Dean, D. R. (2021). Patterning of Nano-Hydroxyapatite onto SiO2 and Electro-spun Mat Surfaces Using Dip-Pen Nanolithography. Journal of Molecular Structure, 1237, 130320. https://doi.org/10.1016/j.molstruc.2021.130320

Schindler, C., Singh, S., Catledge, S. A., Thomas, V., & Dean, D. R. (2021). Patterning of Nano-Hydroxyapatite onto SiO2 and Electro-spun Mat Surfaces Using Dip-Pen Nanolithography. Journal of Molecular Structure, 1237, 130320. https://doi.org/10.1016/j.molstruc.2021.130320

Seth, A., Liu, Y., Gupta, R., Wang, Z., Mittal, E., Kolla, S., Rathi, P., Gupta, P., Parikh, B. A., & Genin, G. M. (2023). Plasmon-Enhanced Digital Fluoroimmunoassay for Subfemtomolar Detection of Protein Biomarkers. Nano Letters. https://doi.org/10.1021/acs.nanolett.3c03789

Seth, A., Liu, Y., Gupta, R., Wang, Z., Mittal, E., Kolla, S., Rathi, P., Gupta, P., Parikh, B. A., & Genin, G. M. (2023). Plasmon-Enhanced Digital Fluoroimmunoassay for Subfemtomolar Detection of Protein Biomarkers. Nano Letters. https://doi.org/10.1021/acs.nanolett.3c03789

Simmons, D. W., Schuftan, D. R., Ramahdita, G., & Huebsch, N. (2023). Hydrogel-Assisted Double Molding Enables Rapid Replication of Stereolithographic 3D Prints for Engineered Tissue Design. ACS Applied Materials & Interfaces. https://doi.org/10.1021/acsami.3c02279 

Simmons, D. W., Schuftan, D. R., Ramahdita, G., & Huebsch, N. (2023). Hydrogel-Assisted Double Molding Enables Rapid Replication of Stereolithographic 3D Prints for Engineered Tissue Design. ACS Applied Materials & Interfaces. https://doi.org/10.1021/acsami.3c02279 

Tobin, M. P., Pfeifer, C. R., Zhu, P. K., Hayes, B. H., Wang, M., Vashisth, M., Xia, Y., Phan, S. H., Belt, S. A., Irianto, J. & Discher, D. (2023). Differences in cell shape, motility, and growth reflect chromosomal number variations that can be visualized with live-cell ChReporters. Molecular Biology of the Cell, mbc. E23-06-0207. https://doi.org/10.1091/mbc.E23-06-0207

Tobin, M. P., Pfeifer, C. R., Zhu, P. K., Hayes, B. H., Wang, M., Vashisth, M., Xia, Y., Phan, S. H., Belt, S. A., Irianto, J. & Discher, D. (2023). Differences in cell shape, motility, and growth reflect chromosomal number variations that can be visualized with live-cell ChReporters. Molecular Biology of the Cell, mbc. E23-06-0207. https://doi.org/10.1091/mbc.E23-06-0207

Tobin, M. P., Pfeifer, C. R., Zhu, P. K., Hayes, B. H., Wang, M., Vashisth, M., Xia, Y., Phan, S. H., Belt, S. A., Irianto, J., & Discher, D. E. (2023). Differences in cell shape, motility, and growth reflect chromosomal number variations that can be visualized with live-cell ChReporters. Molecular Biology of the Cell, 34(13), br19. https://doi.org/10.1091/mbc.E23-06-0207

Tobin, M. P., Pfeifer, C. R., Zhu, P. K., Hayes, B. H., Wang, M., Vashisth, M., Xia, Y., Phan, S. H., Belt, S. A., Irianto, J., & Discher, D. E. (2023). Differences in cell shape, motility, and growth reflect chromosomal number variations that can be visualized with live-cell ChReporters. Molecular Biology of the Cell, 34(13), br19. https://doi.org/10.1091/mbc.E23-06-0207

Uehlin, A. F., Vines, J. B., Feldman, D. S., Nyairo, E., Dean, D. R., & Thomas, V. (2022). Uni-Directionally Oriented Fibro-Porous PLLA/Fibrin Bio-Hybrid Scaffold: Mechano-Morphological and Cell Studies. Pharmaceutics, 14(2), 277-277. https://doi.org/10.3390/PHARMACEUTICS14020277/S1 

Uehlin, A. F., Vines, J. B., Feldman, D. S., Nyairo, E., Dean, D. R., & Thomas, V. (2022). Uni-Directionally Oriented Fibro-Porous PLLA/Fibrin Bio-Hybrid Scaffold: Mechano-Morphological and Cell Studies. Pharmaceutics, 14(2), 277-277. https://doi.org/10.3390/PHARMACEUTICS14020277/S1 

Vega, S. L., Kwon, M. Y., Song, K. H., Wang, C., Mauck, R. L., Han, L., & Burdick, J. A. (2018). Combinatorial hydrogels with biochemical gradients for screening 3D cellular microenvironments. Nature Communications, 9(1), 1–10. https://doi.org/10.1038/s41467-018-03021-5

Vega, S. L., Kwon, M. Y., Song, K. H., Wang, C., Mauck, R. L., Han, L., & Burdick, J. A. (2018). Combinatorial hydrogels with biochemical gradients for screening 3D cellular microenvironments. Nature Communications, 9(1), 1–10. https://doi.org/10.1038/s41467-018-03021-5

Wang, C., Clark, A., Yan, Z., Kong, B., & Cheng, X. (2018). Fabrication and characterization of magnetic-vortex microdiscs for applying force in mechanobiological systems. APS, 2018, A06.002. https://ui.adsabs.harvard.edu/abs/2018APS..MARA06002W/abstract

Wang, C., Clark, A., Yan, Z., Kong, B., & Cheng, X. (2018). Fabrication and characterization of magnetic-vortex microdiscs for applying force in mechanobiological systems. APS, 2018, A06.002. https://ui.adsabs.harvard.edu/abs/2018APS..MARA06002W/abstract

Wang, M., Liu, S., Xu, Z., Qu, K., Li, M., Chen, X., Xue, Q., Genin, G. M., Lu, T. J., & Xu, F. (2020). Characterizing poroelasticity of biological tissues by spherical indentation: An improved theory for large relaxation. Journal of the Mechanics and Physics of Solids, 138, 103920. https://doi.org/10.1016/j.jmps.2020.103920

Wang, M., Liu, S., Xu, Z., Qu, K., Li, M., Chen, X., Xue, Q., Genin, G. M., Lu, T. J., & Xu, F. (2020). Characterizing poroelasticity of biological tissues by spherical indentation: An improved theory for large relaxation. Journal of the Mechanics and Physics of Solids, 138, 103920. https://doi.org/10.1016/j.jmps.2020.103920

Woodhams, L. G., Guo, J., Schuftan, D., Boyle, J. J., Pryse, K. M., Elson, E. L., Huebsch, N., & Genin, G. M. (2023). Virtual blebbistatin: A robust and rapid software approach to motion artifact removal in optical mapping of cardiomyocytes. Proceedings of the National Academy of Sciences, 120(38), e2212949120. https://doi.org/10.1073/pnas.2212949120

Woodhams, L. G., Guo, J., Schuftan, D., Boyle, J. J., Pryse, K. M., Elson, E. L., Huebsch, N., & Genin, G. M. (2023). Virtual blebbistatin: A robust and rapid software approach to motion artifact removal in optical mapping of cardiomyocytes. Proceedings of the National Academy of Sciences, 120(38), e2212949120. https://doi.org/10.1073/pnas.2212949120

Woody, M. S., Capitanio, M., Ostap, E. M., & Goldman, Y. E. (2018). Electro-optic deflectors deliver advantages over acousto-optical deflectors in a high resolution, ultra-fast force-clamp optical trap. Optics Express, 26(9), 11181. https://doi.org/10.1364/oe.26.011181

Woody, M. S., Capitanio, M., Ostap, E. M., & Goldman, Y. E. (2018). Electro-optic deflectors deliver advantages over acousto-optical deflectors in a high resolution, ultra-fast force-clamp optical trap. Optics Express, 26(9), 11181. https://doi.org/10.1364/oe.26.011181

Yeh, Y. C., Corbin, E. A., Caliari, S. R., Ouyang, L., Vega, S. L., Truitt, R., Han, L., Margulies, K. B., & Burdick, J. A. (2017). Mechanically dynamic PDMS substrates to investigate changing cell environments. Biomaterials, 145, 23–32. https://doi.org/10.1016/j.biomaterials.2017.08.033

Yeh, Y. C., Corbin, E. A., Caliari, S. R., Ouyang, L., Vega, S. L., Truitt, R., Han, L., Margulies, K. B., & Burdick, J. A. (2017). Mechanically dynamic PDMS substrates to investigate changing cell environments. Biomaterials, 145, 23–32. https://doi.org/10.1016/j.biomaterials.2017.08.033

Zhou, D., Hao, J., Clark, A., Kim, K., Zhu, L., Liu, J., Cheng, X., & Li, B. (2019). Sono-assisted surface energy driven assembly of 2D materials on flexible polymer substrates: A green assembly method using water. ACS Applied Materials and Interfaces, 11(36), 33458–33464. https://doi.org/10.1021/acsami.9b10469

Zhou, D., Hao, J., Clark, A., Kim, K., Zhu, L., Liu, J., Cheng, X., & Li, B. (2019). Sono-assisted surface energy driven assembly of 2D materials on flexible polymer substrates: A green assembly method using water. ACS Applied Materials and Interfaces, 11(36), 33458–33464. https://doi.org/10.1021/acsami.9b10469

Zhu, H., Yang, H., Ma, Y., Lu, T. J., Xu, F., Genin, G. M., & Lin, M. (2020). Spatiotemporally controlled photoresponsive hydrogels: Design and predictive modeling from processing through application. Advanced Functional Materials, 30(32), 2000639. https://doi.org/10.1002/adfm.202000639

Zhu, H., Yang, H., Ma, Y., Lu, T. J., Xu, F., Genin, G. M., & Lin, M. (2020). Spatiotemporally controlled photoresponsive hydrogels: Design and predictive modeling from processing through application. Advanced Functional Materials, 30(32), 2000639. https://doi.org/10.1002/adfm.202000639

Zhu, H., Yang, X., Genin, G. M., Lu, T. J., Xu, F., & Lin, M. (2018). The relationship between thiol-acrylate photopolymerization kinetics and hydrogel mechanics: An improved model incorporating photobleaching and thiol-Michael addition. Journal of the Mechanical Behavior of Biomedical Materials, 88, 160–169. https://doi.org/10.1016/j.jmbbm.2018.08.013

Zhu, H., Yang, X., Genin, G. M., Lu, T. J., Xu, F., & Lin, M. (2018). The relationship between thiol-acrylate photopolymerization kinetics and hydrogel mechanics: An improved model incorporating photobleaching and thiol-Michael addition. Journal of the Mechanical Behavior of Biomedical Materials, 88, 160–169. https://doi.org/10.1016/j.jmbbm.2018.08.013

Zlotnick, H. M., Clark, A. T., Gullbrand, S. E., Carey, J. L., Cheng, X. M., & Mauck, R. L. (2020). Magnetic Patterning: Magneto‐Driven Gradients of Diamagnetic Objects for Engineering Complex Tissues (Adv. Mater. 48/2020). Advanced Materials, 32(48), 2070356. https://doi.org/10.1002/adma.202070356

Zlotnick, H. M., Clark, A. T., Gullbrand, S. E., Carey, J. L., Cheng, X. M., & Mauck, R. L. (2020). Magnetic Patterning: Magneto‐Driven Gradients of Diamagnetic Objects for Engineering Complex Tissues. Advanced Materials, 32(48), 2070356. https://doi.org/10.1002/adma.202070356

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