Publications

Publications

CEMB Faculty Publications

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Basu, D., Codjoe, J. M., Veley, K. M., & Haswell, E. S. (2022). The Mechanosensitive ion channel msl10 modulates susceptibility to Pseudomonas syringae in Arabidopsis thaliana. Molecular Plant-Microbe Interations. https://doi.org/10.1094/MPMI-08-21-0207-FI

Basu, D., Codjoe, J. M., Veley, K. M., & Haswell, E. S. (2022). The Mechanosensitive ion channel msl10 modulates susceptibility to Pseudomonas syringae in Arabidopsis thaliana. Molecular Plant-Microbe Interations. https://doi.org/10.1094/MPMI-08-21-0207-FI

Bilkey, N., Li, H., Borodinov, N., Ievlev, A. v., Ovchinnikova, O. S., Dixit, R., & Foston, M. (2022). Correlated mechanochemical maps of Arabidopsis thaliana primary cell walls using atomic force microscope infrared spectroscopy. Quantitative Plant Biology, 3, e31. https://doi.org/10.1017/QPB.2022.20

Bilkey, N., Li, H., Borodinov, N., Ievlev, A. v., Ovchinnikova, O. S., Dixit, R., & Foston, M. (2022). Correlated mechanochemical maps of Arabidopsis thaliana primary cell walls using atomic force microscope infrared spectroscopy. Quantitative Plant Biology, 3, e31. https://doi.org/10.1017/QPB.2022.20

Chen, X., Chen, D., Ban, E., Toussaint, K. C., Janmey, P. A., Wells, R. G., & Shenoy, V. B. (2022). Glycosaminoglycans modulate long-range mechanical communication between cells in collagen networks. Proceedings of the National Academy of Sciences, 119(15). https://doi.org/10.1073/PNAS.2116718119

Chen, X., Chen, D., Ban, E., Toussaint, K. C., Janmey, P. A., Wells, R. G., & Shenoy, V. B. (2022). Glycosaminoglycans modulate long-range mechanical communication between cells in collagen networks. Proceedings of the National Academy of Sciences, 119(15). https://doi.org/10.1073/PNAS.2116718119

Clark, A. T., Marchfield, D., Cao, Z., Dang, T., Tang, N., Gilbert, D., Corbin, E. A., Buchanan, K. S., & Cheng, X. M. (2022). The effect of polymer stiffness on magnetization reversal of magnetorheological elastomers. APL Materials, 10(4), 041106. https://doi.org/10.1063/5.0086761

Clark, A. T., Marchfield, D., Cao, Z., Dang, T., Tang, N., Gilbert, D., Corbin, E. A., Buchanan, K. S., & Cheng, X. M. (2022). The effect of polymer stiffness on magnetization reversal of magnetorheological elastomers. APL Materials, 10(4), 041106. https://doi.org/10.1063/5.0086761

Das, S. L., Sutherland, B. P., Lejeune, E., Eyckmans, J., & Chen, C. S. (2022). Mechanical response of cardiac microtissues to acute localized injury. American Journal of Physiology-Heart and Circulatory Physiology. https://doi.org/10.1152/AJPHEART.00305.2022

Das, S. L., Sutherland, B. P., Lejeune, E., Eyckmans, J., & Chen, C. S. (2022). Mechanical response of cardiac microtissues to acute localized injury. American Journal of Physiology-Heart and Circulatory Physiology. https://doi.org/10.1152/AJPHEART.00305.2022

Galarraga, J. H., Dhand, A. P., Bruce P.  Enzmann, I., & Burdick, J. A. (2022). Synthesis, Characterization, and Digital Light Processing of a Hydrolytically Degradable Hyaluronic Acid Hydrogel. Biomacromolecules. https://doi.org/10.1021/ACS.BIOMAC.2C01218

Galarraga, J. H., Dhand, A. P., Bruce P.  Enzmann, I., & Burdick, J. A. (2022). Synthesis, Characterization, and Digital Light Processing of a Hydrolytically Degradable Hyaluronic Acid Hydrogel. Biomacromolecules. https://doi.org/10.1021/ACS.BIOMAC.2C01218

Gardini, L., Woody, M. S., Kashchuk, A. v., Goldman, Y. E., Ostap, E. M., & Capitanio, M. (2022). High-Speed Optical Traps Address Dynamics of Processive and Non-Processive Molecular Motors. Methods in Molecular Biology (Clifton, N.J.), 2478, 513–557. https://doi.org/10.1007/978-1-0716-2229-2_19

Gardini, L., Woody, M. S., Kashchuk, A. v., Goldman, Y. E., Ostap, E. M., & Capitanio, M. (2022). High-Speed Optical Traps Address Dynamics of Processive and Non-Processive Molecular Motors. Methods in Molecular Biology (Clifton, N.J.), 2478, 513–557. https://doi.org/10.1007/978-1-0716-2229-2_19

Heo, S.-J., Thakur, S., Chen, X., Loebel, C., Xia, B., McBeath, R., Burdick, J. A., Shenoy, V. B., Mauck, R. L., & Lakadamyali, M. (2022). Aberrant chromatin reorganization in cells from diseased fibrous connective tissue in response to altered chemomechanical cues. Nature Biomedical Engineering 2022, 1–15. https://doi.org/10.1038/s41551-022-00910-5

Heo, S.-J., Thakur, S., Chen, X., Loebel, C., Xia, B., McBeath, R., Burdick, J. A., Shenoy, V. B., Mauck, R. L., & Lakadamyali, M. (2022). Aberrant chromatin reorganization in cells from diseased fibrous connective tissue in response to altered chemomechanical cues. Nature Biomedical Engineering 2022, 1–15. https://doi.org/10.1038/s41551-022-00910-5
**  NOTE:  see press release for this publication HERE.

Heo, S.-J., Thakur, S., Chen, X., Loebel, C., Xia, B., Mcbeath, R., Burdick, J. A., Shenoy, V. B., Mauck, R. L., Lakadamyali, M.(2022). Chemo-mechanical cues modulate nano-scale chromatin organization in healthy and diseased connective tissue cells. Nature Biomedical Engineering, 2021.04.27.441596. https://doi.org/10.1101/2021.04.27.441596

Heo, S.-J., Thakur, S., Chen, X., Loebel, C., Xia, B., Mcbeath, R., Burdick, J. A., Shenoy, V. B., Mauck, R. L., Lakadamyali, M. (2022). Chemo-mechanical cues modulate nano-scale chromatin organization in healthy and diseased connective tissue cells. Nature Biomedical Engineering, (in press).

Isomursu, A., Park, K.-Y., Hou, J., Cheng, B., Mathieu, M., Shamsan, G. A., Fuller, B., Kasim, J., Mahmoodi, M. M., Lu, T. J., Genin, G. M., Xu, F., Lin, M., Distefano, M. D., Ivaska, J., & Odde, D. J. (2022). Directed cell migration towards softer environments. Nature Materials 2022, 1–10. https://doi.org/10.1038/s41563-022-01294-2

Isomursu, A., Park, K.-Y., Hou, J., Cheng, B., Mathieu, M., Shamsan, G. A., Fuller, B., Kasim, J., Mahmoodi, M. M., Lu, T. J., Genin, G. M., Xu, F., Lin, M., Distefano, M. D., Ivaska, J., & Odde, D. J. (2022). Directed cell migration towards softer environments. Nature Materials 2022, 1–10. https://doi.org/10.1038/s41563-022-01294-2

Jiang, S., Alisafaei, F., Huang, Y.-Y., Hong, Y., Peng, X., Qu, C., Puapatanakul, P., Jain, S., Miner, J. H., Genin, G. M., & Suleiman, H. Y. (2022). An ex vivo culture model of kidney podocyte injury reveals mechanosensitive, synaptopodin-templating, sarcomere-like structures. Science Advances, 8(35), 31. https://doi.org/10.1126/SCIADV.ABN6027

Jiang, S., Alisafaei, F., Huang, Y.-Y., Hong, Y., Peng, X., Qu, C., Puapatanakul, P., Jain, S., Miner, J. H., Genin, G. M., & Suleiman, H. Y. (2022). An ex vivo culture model of kidney podocyte injury reveals mechanosensitive, synaptopodin-templating, sarcomere-like structures. Science Advances, 8(35), 31. https://doi.org/10.1126/SCIADV.ABN6027
**  NOTE:  see press release for this publication HERE.

Jing, H., Korasick, D. A., Emenecker, R. J., Morffy, N., Wilkinson, E. G., Powers, S. K., & Strader, L. C. (2022). Regulation of AUXIN RESPONSE FACTOR condensation and nucleo-cytoplasmic partitioning. Nature Communications, 13(4015). https://doi.org/10.1038/s41467-022-31628-2

Jing, H., Korasick, D. A., Emenecker, R. J., Morffy, N., Wilkinson, E. G., Powers, S. K., & Strader, L. C. (2022). Regulation of AUXIN RESPONSE FACTOR condensation and nucleo-cytoplasmic partitioning. Nature Communications, 13(4015). https://doi.org/10.1038/s41467-022-31628-2

Kraus, E. A., Mellenthin, L. E., Siwiecki, S. A., Song, D., Yan, J., Janmey, P. A., & Sweeney, A. M. (2022). Rheology of marine sponges reveals anisotropic mechanics and tuned dynamics. Journal of the Royal Society Interface, 19(195). https://doi.org/10.1098/RSIF.2022.0476 

Kraus, E. A., Mellenthin, L. E., Siwiecki, S. A., Song, D., Yan, J., Janmey, P. A., & Sweeney, A. M. (2022). Rheology of marine sponges reveals anisotropic mechanics and tuned dynamics. Journal of the Royal Society Interface, 19(195). https://doi.org/10.1098/RSIF.2022.0476

Loebel, C., Saleh, A. M., Jacobson, K. R., Daniels, R., Mauck, R. L., Calve, S., & Burdick, J. A. (2022). Metabolic labeling of secreted matrix to investigate cell–material interactions in tissue engineering and mechanobiology. Nature Protocols, 17(3), 618–648. https://doi.org/10.1038/s41596-021-00652-9

Loebel, C., Saleh, A. M., Jacobson, K. R., Daniels, R., Mauck, R. L., Calve, S., & Burdick, J. A. (2022). Metabolic labeling of secreted matrix to investigate cell–material interactions in tissue engineering and mechanobiology. Nature Protocols, 17(3), 618–648. https://doi.org/10.1038/s41596-021-00652-9

Łysik, D., Deptuła, P., Chmielewska, S., Skłodowski, K., Pogoda, K., Chin, L., Song, D., Mystkowska, J., Janmey, P. A., & Bucki, R. (2022). Modulation of Biofilm Mechanics by DNA Structure and Cell Type. ACS Biomaterials Science & Engineering. https://doi.org/10.1021/ACSBIOMATERIALS.2C00777

Łysik, D., Deptuła, P., Chmielewska, S., Skłodowski, K., Pogoda, K., Chin, L., Song, D., Mystkowska, J., Janmey, P. A., & Bucki, R. (2022). Modulation of Biofilm Mechanics by DNA Structure and Cell Type. ACS Biomaterials Science & Engineering. https://doi.org/10.1021/ACSBIOMATERIALS.2C00777

McEvoy, E., Sneh, T., Moeendarbary, E., Javanmardi, Y., Efimova, N., Yang, C., Marino-Bravante, G. E., Chen, X., Escribano, J., Spill, F., Garcia-Aznar, J. M., Weeraratna, A. T., Svitkina, T. M., Kamm, R. D., & Shenoy, V. B. (2022). Feedback between mechanosensitive signaling and active forces governs endothelial junction integrity. Nature Communications 2022 13:1, 13(1), 1–14. https://doi.org/10.1038/s41467-022-34701-y

McEvoy, E., Sneh, T., Moeendarbary, E., Javanmardi, Y., Efimova, N., Yang, C., Marino-Bravante, G. E., Chen, X., Escribano, J., Spill, F., Garcia-Aznar, J. M., Weeraratna, A. T., Svitkina, T. M., Kamm, R. D., & Shenoy, V. B. (2022). Feedback between mechanosensitive signaling and active forces governs endothelial junction integrity. Nature Communications 2022 13:1, 13(1), 1–14. https://doi.org/10.1038/s41467-022-34701-y

Menezes, R., Vincent, R., Osorno, L., Hu, P., & Arinzeh, T. L. (2022). Biomaterials and Tissue Engineering Approaches using Glycosaminoglycans for Tissue Repair: Lessons Learned from the Native Extracellular Matrix. Acta Biomaterialia. https://doi.org/10.1016/j.actbio.2022.09.064

Menezes, R., Vincent, R., Osorno, L., Hu, P., & Arinzeh, T. L. (2022). Biomaterials and Tissue Engineering Approaches using Glycosaminoglycans for Tissue Repair: Lessons Learned from the Native Extracellular Matrix. Acta Biomaterialia. https://doi.org/10.1016/j.actbio.2022.09.064

Michas, C., Karakan, M. Ç., Nautiyal, P., Seidman, J. G., Seidman, C. E., Agarwal, A., Ekinci, K., Eyckmans, J., White, A. E., & Chen, C. S. (2022). Engineering a living cardiac pump on a chip using high-precision fabrication. Science Advances, 8(16), 3791. https://doi.org/10.1126/SCIADV.ABM3791

Michas, C., Karakan, M. Ç., Nautiyal, P., Seidman, J. G., Seidman, C. E., Agarwal, A., Ekinci, K., Eyckmans, J., White, A. E., & Chen, C. S. (2022). Engineering a living cardiac pump on a chip using high-precision fabrication. Science Advances, 8(16), 3791. https://doi.org/10.1126/SCIADV.ABM3791

Miller, K., Strychalski, W., Nickaeen, M., Carlsson, A., & Haswell, E. S. (2022). In vitro experiments and kinetic models of Arabidopsis pollen hydration mechanics show that MSL8 is not a simple tension-gated osmoregulator. Current Biology. https://doi.org/10.1016/J.CUB.2022.05.033

Miller, K., Strychalski, W., Nickaeen, M., Carlsson, A., & Haswell, E. S. (2022). In vitro experiments and kinetic models of Arabidopsis pollen hydration mechanics show that MSL8 is not a simple tension-gated osmoregulator. Current Biology. https://doi.org/10.1016/J.CUB.2022.05.033

Park, J. Y., Mani, S., Clair, G., Olson, H. M., Paurus, V. L., Ansong, C. K., Blundell, C., Young, R., Kanter, J., Gordon, S., Yi, A. Y., Mainigi, M., & Huh, D. D. (2022). A microphysiological model of human trophoblast invasion during implantation. Nature Communications 2022 13:1, 13(1), 1–18. https://doi.org/10.1038/s41467-022-28663-4

Park, J. Y., Mani, S., Clair, G., Olson, H. M., Paurus, V. L., Ansong, C. K., Blundell, C., Young, R., Kanter, J., Gordon, S., Yi, A. Y., Mainigi, M., & Huh, D. D. (2022). A microphysiological model of human trophoblast invasion during implantation. Nature Communications 2022 13:1, 13(1), 1–18. https://doi.org/10.1038/s41467-022-28663-4

Park, J. Y., Mani, S., Clair, G., Olson, H. M., Paurus, V. L., Ansong, C. K., Blundell, C., Young, R., Kanter, J., Gordon, S., Yi, A. Y., Mainigi, M., & Huh, D. D. (2022). A microphysiological model of human trophoblast invasion during implantation. Nature Communications, 13(1), 1–18. https://doi.org/10.1038/s41467-022-28663-4

Park, J. Y., Mani, S., Clair, G., Olson, H. M., Paurus, V. L., Ansong, C. K., Blundell, C., Young, R., Kanter, J., Gordon, S., Yi, A. Y., Mainigi, M., & Huh, D. D. (2022). A microphysiological model of human trophoblast invasion during implantation. Nature Communications, 13(1), 1–18. https://doi.org/10.1038/s41467-022-28663-4

Peng, X., Liu, Y., He, W., Hoppe, E. D., Zhou, L., Xin, F., Haswell, E. S., Pickard, B. G., Genin, G. M., & Lu, T. J. (2022). Acoustic radiation force on a long cylinder,and potential sound transduction by tomato trichomes. Biophysical Journal. https://doi.org/10.1016/J.BPJ.2022.08.038

Peng, X., Liu, Y., He, W., Hoppe, E. D., Zhou, L., Xin, F., Haswell, E. S., Pickard, B. G., Genin, G. M., & Lu, T. J. (2022). Acoustic radiation force on a long cylinder,and potential sound transduction by tomato trichomes. Biophysical Journal. https://doi.org/10.1016/J.BPJ.2022.08.038

Pfeifer, C. R., Tobin, M. P., Cho, S., Vashisth, M., Dooling, L. J., Vazquez, L. L., Ricci-De Lucca, E. G., Simon, K. T., & Discher, D. E. (2022). Gaussian curvature dilutes the nuclear lamina, favoring nuclear rupture, especially at high strain rate. Nucleus, 13(1), 129–143. https://www.tandfonline.com/doi/full/10.1080/19491034.2022.2045726

Pfeifer, C. R., Tobin, M. P., Cho, S., Vashisth, M., Dooling, L. J., Vazquez, L. L., Ricci-De Lucca, E. G., Simon, K. T., & Discher, D. E. (2022). Gaussian curvature dilutes the nuclear lamina, favoring nuclear rupture, especially at high strain rate. Nucleus, 13(1), 129–143.  https://www.tandfonline.com/doi/full/10.1080/19491034.2022.2045726

Pfeifer, C. R., Tobin, M. P., Cho, S., Vashisth, M., Dooling, L. J., Vazquez, L. L., Ricci-De Lucca, E. G., Simon, K. T., & Discher, D. E. (2022). Gaussian curvature dilutes the nuclear lamina, favoring nuclear rupture, especially at high strain rate. Nucleus, 13(1), 129–143. https://doi.org/10.1080/19491034.2022.2045726

Pfeifer, C. R., Tobin, M. P., Cho, S., Vashisth, M., Dooling, L. J., Vazquez, L. L., Ricci-De Lucca, E. G., Simon, K. T., & Discher, D. E. (2022). Gaussian curvature dilutes the nuclear lamina, favoring nuclear rupture, especially at high strain rate. Nucleus, 13(1), 129–143. https://doi.org/10.1080/19491034.2022.2045726

Qazi, T. H., Muir, V. G., & Burdick, J. A. (2022). Methods to characterize granular hydrogel rheological properties, porosity, and cell invasion. ACS Biomaterials Science & Engineering, 8(4), 1427–1442. https://doi.org/10.1021/ACSBIOMATERIALS.1C01440

Qazi, T. H., Muir, V. G., & Burdick, J. A. (2022). Methods to characterize granular hydrogel rheological properties, porosity, and cell invasion. ACS Biomaterials Science & Engineering, 8(4), 1427–1442. https://doi.org/10.1021/ACSBIOMATERIALS.1C01440

Qazi, T. H., Wu, J., Muir, V. G., Weintraub, S., Gullbrand, S. E., Lee, D., Issadore, D., & Burdick, J. A. (2022). Anisotropic rod-shaped particles influence injectable granular hydrogel properties and cell invasion. Advanced Materials, 34(12), 2109194. https://doi.org/10.1002/ADMA.202109194

Qazi, T. H., Wu, J., Muir, V. G., Weintraub, S., Gullbrand, S. E., Lee, D., Issadore, D., & Burdick, J. A. (2022). Anisotropic rod-shaped particles influence injectable granular hydrogel properties and cell invasion. Advanced Materials, 34(12), 2109194. https://doi.org/10.1002/ADMA.202109194

Qu, C., Roth, R., Puapatanakul, P., Loitman, C., Hammad, D., Genin, G. M., Miner, J. H., & Suleiman, H. Y. (2022). Three-dimensional visualization of the podocyte actin network using integrated membrane extraction, electron microscopy, and machine learning. Journal of the American Society of Nephrology, 33(1), 155–173. https://doi.org/10.1681/ASN.2021020182

Qu, C., Roth, R., Puapatanakul, P., Loitman, C., Hammad, D., Genin, G. M., Miner, J. H., & Suleiman, H. Y. (2022). Three-dimensional visualization of the podocyte actin network using integrated membrane extraction, electron microscopy, and machine learning. Journal of the American Society of Nephrology, 33(1), 155–173. https://doi.org/10.1681/ASN.2021020182

Roeder, A. H. K., Otegui, M. S., Dixit, R., Anderson, C. T., Faulkner, C., Zhang, Y., Harrison, M. J., Kirchhelle, C., Goshima, G., Coate, J. E., Doyle, J. J., Hamant, O., Sugimoto, K., Dolan, L., Meyer, H., Ehrhardt, D. W., Boudaoud, A., & Messina, C. (2022). Fifteen compelling open questions in plant cell biology. The Plant Cell, 34(1), 72–102. https://doi.org/10.1093/PLCELL/KOAB225

Roeder, A. H. K., Otegui, M. S., Dixit, R., Anderson, C. T., Faulkner, C., Zhang, Y., Harrison, M. J., Kirchhelle, C., Goshima, G., Coate, J. E., Doyle, J. J., Hamant, O., Sugimoto, K., Dolan, L., Meyer, H., Ehrhardt, D. W., Boudaoud, A., & Messina, C. (2022). Fifteen compelling open questions in plant cell biology. The Plant Cell, 34(1), 72–102. https://doi.org/10.1093/PLCELL/KOAB225

Sarpangala, N., & Gopinathan, A. (2022). Cargo surface fluidity can reduce inter-motor mechanical interference, promote load-sharing and enhance processivity in teams of molecular motors. PLOS Computational Biology, 18(6), e1010217. https://doi.org/10.1371/journal.pcbi.1010217 

Sarpangala, N., & Gopinathan, A. (2022). Cargo surface fluidity can reduce inter-motor mechanical interference, promote load-sharing and enhance processivity in teams of molecular motors. PLOS Computational Biology, 18(6), e1010217. https://doi.org/10.1371/journal.pcbi.1010217 

Wang, Y., Coomey, J., Miller, K., Jensen, G. S., & Haswell, E. S. (2022). Interactions between a mechanosensitive channel and cell wall integrity signaling influence pollen germination in Arabidopsis thaliana. Journal of Experimental Botany, 73(5), 1533–1545. https://doi.org/10.1093/JXB/ERAB525

Wang, Y., Coomey, J., Miller, K., Jensen, G. S., & Haswell, E. S. (2022). Interactions between a mechanosensitive channel and cell wall integrity signaling influence pollen germination in Arabidopsis thaliana. Journal of Experimental Botany, 73(5), 1533–1545. https://doi.org/10.1093/JXB/ERAB525

Zlotnick, H. M., Locke, R. C., Hemdev, S., Stoeckl, B. D., Gupta, S., Peredo, A. P., Steinberg, D. R., Carey, J. L., Lee, D., Dodge, G. R., & Mauck, R. L. (2022). Gravity-based patterning of osteogenic factors to preserve bone structure after osteochondral injury in a large animal model. Biofabrication. https://doi.org/10.1088/1758-5090/AC79CD

Zlotnick, H. M., Locke, R. C., Hemdev, S., Stoeckl, B. D., Gupta, S., Peredo, A. P., Steinberg, D. R., Carey, J. L., Lee, D., Dodge, G. R., & Mauck, R. L. (2022). Gravity-based patterning of osteogenic factors to preserve bone structure after osteochondral injury in a large animal model. Biofabrication. https://doi.org/10.1088/1758-5090/AC79CD
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