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Publications

CEMB Faculty Publications

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Ahmadzadeh, H., Webster, M. R., Behera, R., Valencia, A. M. J., Wirtz, D., Weeraratna, A. T., & Shenoy, V. B. (2017). Modeling the two-way feedback between contractility and matrix realignment reveals a nonlinear mode of cancer cell invasion. Proceedings of the National Academy of Sciences of the United States of America, 114(9), E1617–E1626. https://doi.org/10.1073/pnas.1617037114

Ahmadzadeh, H., Webster, M. R., Behera, R., Valencia, A. M. J., Wirtz, D., Weeraratna, A. T., & Shenoy, V. B. (2017). Modeling the two-way feedback between contractility and matrix realignment reveals a nonlinear mode of cancer cell invasion. Proceedings of the National Academy of Sciences of the United States of America, 114(9), E1617–E1626. https://doi.org/10.1073/pnas.1617037114

Babaei, B., Velasquez-Mao, A. J., Thomopoulos, S., Elson, E. L., Abramowitch, S. D., & Genin, G. M. (2017). Discrete quasi-linear viscoelastic damping analysis of connective tissues, and the biomechanics of stretching. Journal of the Mechanical Behavior of Biomedical Materials, 69, 193–202. https://doi.org/10.1016/j.jmbbm.2016.12.013

Babaei, B., Velasquez-Mao, A. J., Thomopoulos, S., Elson, E. L., Abramowitch, S. D., & Genin, G. M. (2017). Discrete quasi-linear viscoelastic damping analysis of connective tissues, and the biomechanics of stretching. Journal of the Mechanical Behavior of Biomedical Materials, 69, 193–202. https://doi.org/10.1016/j.jmbbm.2016.12.013

Basu, D., & Haswell, E. S. (2017). Plant mechanosensitive ion channels: an ocean of possibilities. Current Opinion in Plant Biology , 40, 43–48. https://doi.org/10.1016/j.pbi.2017.07.002

Basu, D., & Haswell, E. S. (2017). Plant mechanosensitive ion channels: an ocean of possibilities. Current Opinion in Plant Biology , 40, 43–48. https://doi.org/10.1016/j.pbi.2017.07.002

Cao, X., Ban, E., Baker, B. M., Lin, Y., Burdick, J. A., Chen, C. S., & Shenoy, V. B. (2017). Multiscale model predicts increasing focal adhesion size with decreasing stiffness in fibrous matrices. Proceedings of the National Academy of Sciences of the United States of America, 114(23), E4549–E4555. https://doi.org/10.1073/pnas.1620486114

Cao, X., Ban, E., Baker, B. M., Lin, Y., Burdick, J. A., Chen, C. S., & Shenoy, V. B. (2017). Multiscale model predicts increasing focal adhesion size with decreasing stiffness in fibrous matrices. Proceedings of the National Academy of Sciences of the United States of America, 114(23), E4549–E4555. https://doi.org/10.1073/pnas.1620486114

Cheng, B., Lin, M., Huang, G., Li, Y., Ji, B., Genin, G. M., Deshpande, V. S., Lu, T. J., & Xu, F. (2017). Cellular mechanosensing of the biophysical microenvironment: A review of mathematical models of biophysical regulation of cell responses. Physics of Life Reviews, 22–23, 88–119. https://doi.org/10.1016/j.plrev.2017.06.016

Cheng, B., Lin, M., Huang, G., Li, Y., Ji, B., Genin, G. M., Deshpande, V. S., Lu, T. J., & Xu, F. (2017). Cellular mechanosensing of the biophysical microenvironment: A review of mathematical models of biophysical regulation of cell responses. Physics of Life Reviews, 22–23, 88–119. https://doi.org/10.1016/j.plrev.2017.06.016

Damaraju, S. M., Shen, Y., Elele, E., Khusid, B., Eshghinejad, A., Li, J., Jaffe, M., & Arinzeh, T. L. (2017). Three-dimensional piezoelectric fibrous scaffolds selectively promote mesenchymal stem cell differentiation. Biomaterials, 149, 51–62. https://doi.org/10.1016/j.biomaterials.2017.09.024

Damaraju, S. M., Shen, Y., Elele, E., Khusid, B., Eshghinejad, A., Li, J., Jaffe, M., & Arinzeh, T. L. (2017). Three-dimensional piezoelectric fibrous scaffolds selectively promote mesenchymal stem cell differentiation. Biomaterials, 149, 51–62. https://doi.org/10.1016/j.biomaterials.2017.09.024

Frick, E. M., & Strader, L. C. (2018). Roles for IBA-derived auxin in plant development. Journal of Experimental Botany, 69(2), 169–177. https://doi.org/10.1093/jxb/erx298

Frick, E. M., & Strader, L. C. (2018). Roles for IBA-derived auxin in plant development. Journal of Experimental Botany, 69(2), 169–177. https://doi.org/10.1093/jxb/erx298

Ganguly, A., DeMott, L., & Dixit, R. (2017). The Arabidopsis kinesin-4, FRA1, requires a high level of processive motility to function correctly. Journal of Cell Science, 130(7), 1232–1238. https://doi.org/10.1242/jcs.196857

Ganguly, A., DeMott, L., & Dixit, R. (2017). The Arabidopsis kinesin-4, FRA1, requires a high level of processive motility to function correctly. Journal of Cell Science, 130(7), 1232–1238. https://doi.org/10.1242/jcs.196857

Genin, G. M., Shenoy, V. B., Peng, G. C. Y., & Buehler, M. J. (2017). Integrated multiscale biomaterials experiment and modeling. ACS Biomaterials Science & Engineering, 3(11), 2628–2632. https://doi.org/10.1021/acsbiomaterials.7b00821

Genin, G. M., Shenoy, V. B., Peng, G. C. Y., & Buehler, M. J. (2017). Integrated multiscale biomaterials experiment and modeling. ACS Biomaterials Science & Engineering, 3(11), 2628–2632. https://doi.org/10.1021/acsbiomaterials.7b00821

Hamant, O., & Haswell, E. S. (2017). Life behind the wall: Sensing mechanical cues in plants. BMC Biology, 15 (1),1–9. https://doi.org/10.1186/s12915-017-0403-5

Hamant, O., & Haswell, E. S. (2017). Life behind the wall: Sensing mechanical cues in plants. BMC Biology, 15 (1),1–9. https://doi.org/10.1186/s12915-017-0403-5

Huang, G., Li, F., Zhao, X., Ma, Y., Li, Y., Lin, M., Jin, G., Lu, T. J., Genin, G. M., & Xu, F. (2017). Functional and biomimetic materials for engineering of the three-dimensional cell microenvironment. Chemical Reviews, 117 (20), 12764–12850. https://doi.org/10.1021/acs.chemrev.7b00094

Huang, G., Li, F., Zhao, X., Ma, Y., Li, Y., Lin, M., Jin, G., Lu, T. J., Genin, G. M., & Xu, F. (2017). Functional and biomimetic materials for engineering of the three-dimensional cell microenvironment. Chemical Reviews, 117 (20), 12764–12850. https://doi.org/10.1021/acs.chemrev.7b00094

Jiang, Y., Pryse, K. M., Melnykov, A., Genin, G. M., & Elson, E. L. (2017). Investigation of Nanoscopic phase separations in lipid membranes using inverse fcs. Biophysical Journal, 112(11), 2367–2376. https://doi.org/10.1016/j.bpj.2017.04.013

Jiang, Y., Pryse, K. M., Melnykov, A., Genin, G. M., & Elson, E. L. (2017). Investigation of Nanoscopic phase separations in lipid membranes using inverse fcs. Biophysical Journal, 112(11), 2367–2376. https://doi.org/10.1016/j.bpj.2017.04.013

Lin, M., Liu, S. B., Genin, G. M., Zhu, Y., Shi, M., Ji, C., Li, A., Lu, T. J., & Xu, F. (2017). Melting away pain: decay of thermal nociceptor transduction during heat-induced irreversible desensitization of ion channels. ACS Biomaterials Science and Engineering, 3(11), 3029–3035. https://doi.org/10.1021/acsbiomaterials.6b00789

Lin, M., Liu, S. B., Genin, G. M., Zhu, Y., Shi, M., Ji, C., Li, A., Lu, T. J., & Xu, F. (2017). Melting away pain: decay of thermal nociceptor transduction during heat-induced irreversible desensitization of ion channels. ACS Biomaterials Science and Engineering, 3(11), 3029–3035. https://doi.org/10.1021/acsbiomaterials.6b00789

Lipner, J., Boyle, J. J., Xia, Y., Birman, V., Genin, G. M., & Thomopoulos, S. (2017). Toughening of fibrous scaffolds by mobile mineral deposits. Acta Biomaterialia, 58, 492–501. https://doi.org/10.1016/j.actbio.2017.05.033

Lipner, J., Boyle, J. J., Xia, Y., Birman, V., Genin, G. M., & Thomopoulos, S. (2017). Toughening of fibrous scaffolds by mobile mineral deposits. Acta Biomaterialia, 58, 492–501. https://doi.org/10.1016/j.actbio.2017.05.033

Lippert, L. G., Dadosh, T., Hadden, J. A., Karnawat, V., Diroll, B. T., Murray, C. B., Holzbaur, E. L. F., Schulten, K., Reck-Peterson, S. L., & Goldman, Y. E. (2017). Angular measurements of the dynein ring reveal a stepping mechanism dependent on a flexible stalk. Proceedings of the National Academy of Sciences of the United States of America, 114(23), E4564–E4573. https://doi.org/10.1073/pnas.1620149114

Lippert, L. G., Dadosh, T., Hadden, J. A., Karnawat, V., Diroll, B. T., Murray, C. B., Holzbaur, E. L. F., Schulten, K., Reck-Peterson, S. L., & Goldman, Y. E. (2017). Angular measurements of the dynein ring reveal a stepping mechanism dependent on a flexible stalk. Proceedings of the National Academy of Sciences of the United States of America, 114(23), E4564–E4573. https://doi.org/10.1073/pnas.1620149114

Liu, S., Jiao, J., Lu, T. J., Xu, F., Pickard, B. G., & Genin, G. M. (2017). Arabidopsis leaf trichomes as acoustic antennae. Biophysical Journal, 113(9), 2068–2076. https://doi.org/10.1016/j.bpj.2017.07.035

Liu, S., Jiao, J., Lu, T. J., Xu, F., Pickard, B. G., & Genin, G. M. (2017). Arabidopsis leaf trichomes as acoustic antennae. Biophysical Journal, 113(9), 2068–2076. https://doi.org/10.1016/j.bpj.2017.07.035

Melo, A. M., Elbaum-Garfinkle, S., & Rhoades, E. (2017). Insights into tau function and dysfunction through single-molecule fluorescence. Methods in Cell Biology, 141, 27–44. https://doi.org/10.1016/bs.mcb.2017.06.010

Melo, A. M., Elbaum-Garfinkle, S., & Rhoades, E. (2017). Insights into tau function and dysfunction through single-molecule fluorescence. Methods in Cell Biology, 141, 27–44. https://doi.org/10.1016/bs.mcb.2017.06.010

Mugnai, M. L., & Thirumalai, D. (2017). Kinematics of the lever arm swing in myosin VI. Proceedings of the National Academy of Sciences of the United States of America, 114(22), E4389–E4398. https://doi.org/10.1073/pnas.1615708114

Mugnai, M. L., & Thirumalai, D. (2017). Kinematics of the lever arm swing in myosin VI. Proceedings of the National Academy of Sciences of the United States of America, 114(22), E4389–E4398. https://doi.org/10.1073/pnas.1615708114

Polacheck, W. J., Kutys, M. L., Yang, J., Eyckmans, J., Wu, Y., Vasavada, H., Hirschi, K. K., & Chen, C. S. (2017). A non-canonical Notch complex regulates adherens junctions and vascular barrier function. Nature, 552(7684), 258–262.

Polacheck, W. J., Kutys, M. L., Yang, J., Eyckmans, J., Wu, Y., Vasavada, H., Hirschi, K. K., & Chen, C. S. (2017). A non-canonical Notch complex regulates adherens junctions and vascular barrier function. Nature, 552(7684), 258–262.

Poleshko, A., Shah, P. P., Gupta, M., Babu, A., Morley, M. P., Manderfield, L. J., Ifkovits, J. L., Calderon, D., Aghajanian, H., Sierra-Pagán, J. E., Sun, Z., Wang, Q., Li, L., Dubois, N. C., Morrisey, E. E., Lazar, M. A., Smith, C. L., Epstein, J. A., & Jain, R. (2017). Genome-nuclear lamina interactions regulate cardiac stem cell lineage restriction. Cell, 171(3), 573-587.e14. https://doi.org/10.1016/j.cell.2017.09.018

Poleshko, A., Shah, P. P., Gupta, M., Babu, A., Morley, M. P., Manderfield, L. J., Ifkovits, J. L., Calderon, D., Aghajanian, H., Sierra-Pagán, J. E., Sun, Z., Wang, Q., Li, L., Dubois, N. C., Morrisey, E. E., Lazar, M. A., Smith, C. L., Epstein, J. A., & Jain, R. (2017). Genome-nuclear lamina interactions regulate cardiac stem cell lineage restriction. Cell, 171(3), 573-587.e14. https://doi.org/10.1016/j.cell.2017.09.018

Pyrpassopoulos, S., Shuman, H., & Ostap, E.M. (2017). Adhesion force and attachment lifetime of the kif16b-px domain interaction with lipid membranes. Molecular Biology of the Cell, 28(23), 3315–3322. https://doi.org/10.1091/mbc.E17-05-0324

Pyrpassopoulos, S., Shuman, H., & Ostap, E.M. (2017). Adhesion force and attachment lifetime of the kif16b-px domain interaction with lipid membranes. Molecular Biology of the Cell, 28(23), 3315–3322. https://doi.org/10.1091/mbc.E17-05-0324

Rosales, A. M., Vega, S. L., DelRio, F. W., Burdick, J. A., & Anseth, K. S. (2017). Hydrogels with reversible mechanics to probe dynamic cell microenvironments. Angewandte Chemie International Edition, 56(40), 12132–12136. https://doi.org/10.1002/anie.201705684

Rosales, A. M., Vega, S. L., DelRio, F. W., Burdick, J. A., & Anseth, K. S. (2017). Hydrogels with reversible mechanics to probe dynamic cell microenvironments. Angewandte Chemie International Edition, 56(40), 12132–12136. https://doi.org/10.1002/anie.201705684

Shutova, M. S., Asokan, S. B., Talwar, S., Assoian, R. K., Bear, J. E., & Svitkina, T. M. (2017). Self-sorting of nonmuscle myosins IIA and IIB polarizes the cytoskeleton and modulates cell motility. Journal of Cell Biology, 216(9), 2877–2889. https://doi.org/10.1083/jcb.201705167

Shutova, M. S., Asokan, S. B., Talwar, S., Assoian, R. K., Bear, J. E., & Svitkina, T. M. (2017). Self-sorting of nonmuscle myosins IIA and IIB polarizes the cytoskeleton and modulates cell motility. Journal of Cell Biology, 216(9), 2877–2889. https://doi.org/10.1083/jcb.201705167

Spencer, T. M., Blumenstein, R. F., Pryse, K. M., Lee, S. L., Glaubke, D. A., Carlson, B. E., Elson, E. L., & Genin, G. M. (2017). Fibroblasts slow conduction velocity in a reconstituted tissue model of fibrotic cardiomyopathy. ACS Biomaterials Science and Engineering, 3(11), 3022–3028. https://doi.org/10.1021/acsbiomaterials.6b00576

Spencer, T. M., Blumenstein, R. F., Pryse, K. M., Lee, S. L., Glaubke, D. A., Carlson, B. E., Elson, E. L., & Genin, G. M. (2017). Fibroblasts slow conduction velocity in a reconstituted tissue model of fibrotic cardiomyopathy. ACS Biomaterials Science and Engineering, 3(11), 3022–3028. https://doi.org/10.1021/acsbiomaterials.6b00576

Tutwiler, V., Wang, H., Litvinov, R. I., Weisel, J. W., & Shenoy, V. B. (2017). Interplay of platelet contractility and elasticity of fibrin/erythrocytes in blood clot retraction. Biophysical Journal, 112(4), 714–723. https://doi.org/10.1016/j.bpj.2017.01.005

Tutwiler, V., Wang, H., Litvinov, R. I., Weisel, J. W., & Shenoy, V. B. (2017). Interplay of platelet contractility and elasticity of fibrin/erythrocytes in blood clot retraction. Biophysical Journal, 112(4), 714–723. https://doi.org/10.1016/j.bpj.2017.01.005

Wang, X., & Carlsson, A. E. (2017). A master equation approach to actin polymerization applied to endocytosis in yeast. PLoS Computational Biology, 13(12), e1005901. https://doi.org/10.1371/journal.pcbi.1005901

Wang, X., & Carlsson, A. E. (2017). A master equation approach to actin polymerization applied to endocytosis in yeast. PLoS Computational Biology, 13(12), e1005901. https://doi.org/10.1371/journal.pcbi.1005901

Yeh, Y. C., Corbin, E. A., Caliari, S. R., Ouyang, L., Vega, S. L., Truitt, R., Han, L., Margulies, K. B., & Burdick, J. A. (2017). Mechanically dynamic PDMS substrates to investigate changing cell environments. Biomaterials, 145, 23–32. https://doi.org/10.1016/j.biomaterials.2017.08.033

Yeh, Y. C., Corbin, E. A., Caliari, S. R., Ouyang, L., Vega, S. L., Truitt, R., Han, L., Margulies, K. B., & Burdick, J. A. (2017). Mechanically dynamic PDMS substrates to investigate changing cell environments. Biomaterials, 145, 23–32. https://doi.org/10.1016/j.biomaterials.2017.08.033

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